rs29162397 SNP Detail

Summary

• ID
  rs29162397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69341754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC TGCTCCTTCT CATTCTCTGG
  Y
  TTTCTGTCTT CACCTGTGGC TAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38951887	mCV22301613	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss137856819	ENSMUSSNP2145512	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss324083683	CHEV_12_70395967	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29162397					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69341754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4692	CpG island 4692	1438 bp proximal
Klhdc2	kelch domain containing 2	1701 bp upstream
Rr467019	regulatory region 467019	388 bp distal
Rr467020	regulatory region 467020	1252 bp proximal
Rr467021	regulatory region 467021	1753 bp proximal
Tssr113629	transcription start site region 113629	1002 bp upstream
Tssr113630	transcription start site region 113630	1696 bp upstream
Tssr113631	transcription start site region 113631	1851 bp upstream
Tssr113632	transcription start site region 113632	1948 bp upstream
Tssr113633	transcription start site region 113633	1958 bp upstream
Tssr113634	transcription start site region 113634	1984 bp upstream
Tssr113635	transcription start site region 113635	1992 bp upstream