rs29162473 SNP Detail

Summary

• ID
  rs29162473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110666713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTATGG CTCTTAGTTG
  TCATCTTATT CAGTGCACCC CAGGGCCCAC CCTAGGGTCT CATCTAAGTT CTTCAGCACC
  CCTTTGAAAC ATAACTCTAG AAGCCACTGC GATCCTATAT ATAGCTACTG AGTTGACACT
  TGAGCACAAC TCTCCTGAGT TTGTATGTGT GCGTGTGTGT GTCTTGCTTT TCCTGAGCAG
  Y
  TACTGATCCT CCTGCTTAAA TATATGTTAA AATTTCCTCT TAAATTCTAG CTCTACTTGA
  CACTAGCTTG TCTCAAACAT CTTTTCAACA GTAAAGTTAA GAATGCTGTT TTTGTCAGGT
  GGTGGTGGCA CACACCTTTA CTCTCAGCAC TTGGGAGGCA GAGGCAGGTA GATTCTGAGT
  TCGAGGCCAG CCTGGTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38953689	mCV24497728	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss138692779	ENSMUSSNP636809	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29162473					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110666713 () rs orientation: forward

Symbol	Name	Function Class
Gm60091	predicted gene, 60091	1851 bp downstream
Gm60092	predicted gene, 60092	701 bp downstream
Rr472970	regulatory region 472970	1204 bp distal
Rr472971	regulatory region 472971	776 bp distal
Rr472972	regulatory region 472972	545 bp distal
Rr472973	regulatory region 472973	389 bp proximal
Tssr115233	transcription start site region 115233	1175 bp downstream