rs29162586 SNP Detail

Summary

• ID
  rs29162586
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8059619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCCCAT TGAGATTTTC
  CACTCCAGAA TTCACTCTTC TCAACACCTT CCATGTCCAT TCCTTTACAA TTGACTTGCT
  GGAAATAAAA GCAAAGATCA TTAGAACTAT CGACCAAATT TTGAGCAGTG AGCTACAGTG
  GCCTCTTCCA GAAATGTATT TGAGAGACCT GGATGTAGTG AACATTCCTC TTGCAAGACT
  S
  ACTCTGCCAG ACTTCCATGT ACCAGAAATC ACAATTCCAG AATTCACAAT CCCAAATGTC
  AATCTCAAAG ATTTACACGT TCCTGATCTT CACATACCAG AATTCCAACT TCCTCACCTC
  TCACATACAA TTGAAATACC TGCTTTTGGC AAACTGCATA GCATCCTTAA GATCCAATCT
  CCTCTCTTTA TATTAGATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38952908	mCV24183298	ABI	CRAMUS_MOUSE	f	SNP		G	C				G		G
ss50958145	NES14429015	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	G	C		C	G	G	G		C	C	C		C
ss137107630	ENSMUSSNP4988855	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						G
ss323884666	CHEV_12_8016425	CHEVERUD	SCREENING_POP	f	SNP												C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29162586					SNP	G	G	C	C	G	C	G	C	G	G	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958145	NES14429015	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8059619 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	907 bp downstream
Tssr112639	transcription start site region 112639	1800 bp downstream
Tssr112640	transcription start site region 112640	1758 bp downstream
Tssr112641	transcription start site region 112641	1706 bp downstream
Tssr112642	transcription start site region 112642	1632 bp downstream
Tssr112643	transcription start site region 112643	1543 bp downstream
Tssr112644	transcription start site region 112644	1329 bp downstream
Tssr112645	transcription start site region 112645	1227 bp downstream
Tssr112646	transcription start site region 112646	1198 bp downstream
Tssr112647	transcription start site region 112647	1026 bp downstream
Tssr112648	transcription start site region 112648	1004 bp downstream
Tssr112649	transcription start site region 112649	522 bp downstream
Tssr112650	transcription start site region 112650	442 bp downstream
Tssr112651	transcription start site region 112651	390 bp downstream
Tssr112652	transcription start site region 112652	360 bp downstream
Tssr112653	transcription start site region 112653	341 bp downstream
Tssr112654	transcription start site region 112654	327 bp downstream
Tssr112655	transcription start site region 112655	304 bp downstream
Tssr112656	transcription start site region 112656	284 bp downstream
Tssr112657	transcription start site region 112657	270 bp downstream
Tssr112658	transcription start site region 112658	237 bp downstream
Tssr112659	transcription start site region 112659	158 bp downstream
Tssr112660	transcription start site region 112660	34 bp downstream
Tssr112661	transcription start site region 112661	188 bp upstream
Tssr112662	transcription start site region 112662	432 bp upstream
Tssr112663	transcription start site region 112663	667 bp upstream
Tssr112664	transcription start site region 112664	692 bp upstream
Tssr112665	transcription start site region 112665	857 bp upstream
Tssr112666	transcription start site region 112666	866 bp upstream
Tssr112667	transcription start site region 112667	913 bp upstream
Tssr112668	transcription start site region 112668	1051 bp upstream
Tssr112669	transcription start site region 112669	1136 bp upstream
Tssr112670	transcription start site region 112670	1189 bp upstream
Tssr112671	transcription start site region 112671	1304 bp upstream
Tssr112672	transcription start site region 112672	1883 bp upstream
Tssr112673	transcription start site region 112673	1926 bp upstream