rs29163634 SNP Detail

Summary

• ID
  rs29163634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112686969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GACACCATTC CTTCATCTCC
  Y
  GTCCTTCACC TTGGAAGGAG CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38958314	mCV24491833	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss138726376	ENSMUSSNP3465503	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss324170484	CHEV_12_113958746	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29163634					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112686969 () rs orientation: forward

Symbol	Name	Function Class
Cep170b	centrosomal protein 170B	981 bp upstream
Cpgi5179	CpG island 5179	725 bp proximal
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473583	regulatory region 473583	105 bp proximal
Rr473584	regulatory region 473584	1158 bp proximal
Rr473585	regulatory region 473585	1492 bp proximal
Rr473586	regulatory region 473586	1670 bp proximal
Tssr115398	transcription start site region 115398	1279 bp downstream
Tssr115399	transcription start site region 115399	570 bp upstream
Tssr115400	transcription start site region 115400	969 bp upstream
Tssr115401	transcription start site region 115401	1294 bp upstream
Tssr115402	transcription start site region 115402	1628 bp upstream
Tssr115403	transcription start site region 115403	1975 bp upstream
Tssr117886	transcription start site region 117886	1157 bp downstream
Tssr117887	transcription start site region 117887	1195 bp downstream
Tssr117888	transcription start site region 117888	1225 bp downstream