rs29164149 SNP Detail

Summary

• ID
  rs29164149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:36221202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGGGGT ATTGGCGCCT
  ACCACAGCAC AGGTCTGCAG GTCGGAGAAC AACATGCATG AGTCGGTTCC CTCCTTCCAC
  CATGTGGATT GTGGGGATTG AACTCCAGTC CTCAGGCTTG GCAGCAAGCG CTCTGACCCA
  CTTAACCATC TTGCCAGCCC GGGGACCTGT TCCTTTAGTG ACTTCAAGTC AGTTGGTTCT
  Y
  CAAGCATTTC TTCTTTCAAA GTGGCTTCTT TGAGTCTAGA TCTTTACATT TTAGTGAAAT
  CCAAACCTTT TTTTGGTCTT TTGACGAAAG AGCTGCCATG ATAGTGCTGG CCATTAGCTT
  GATGGACCTA TCATTCATGC GATCATCCGT GCAGGAACTT ACCCTTACGT GCTTGCAAGC
  CATCTTACTG AATAAAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38961554	mCV24925268	ABI	CRAMUS_MOUSE	f	SNP		T				C		C
ss50978989	NES14410899	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T		C	C	C	C		C	C	C	C		C
ss137628198	ENSMUSSNP159528	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss324007693	CHEV_12_36897790	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29164149					SNP	C	T	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978989	NES14410899	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36221202 () rs orientation: forward

Symbol	Name	Function Class
Ankmy2	ankyrin repeat and MYND domain containing 2	within coordinates
Gm19046	predicted gene, 19046	1165 bp upstream