rs29164167 SNP Detail

Summary

• ID
  rs29164167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101611314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATA GAACAACTGA AATGTTCAGA
  R
  GAAAAATCTT GGCTTTCTGA GGTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38960549	mCV24523799	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		A
ss47242358	NES11396962	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G		G	A	A	A		G	A	A	G		G
ss138001588	ENSMUSSNP2357728	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss324141069	CHEV_12_102883265	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29164167					SNP	A	A	G	A	A	A	G	G	G	A	A	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47242358	NES11396962	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101611314 () rs orientation: forward

Symbol	Name	Function Class
Gm16285	predicted gene 16285	1131 bp upstream
Tc2n	tandem C2 domains, nuclear	388 bp downstream
Tssr117358	transcription start site region 117358	1219 bp downstream