rs29164472 SNP Detail

Summary

• ID
  rs29164472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110340386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTGGAA ATGCGTGCGC
  CCTTGAAAGA AAACCGCCTC CTCTGTCCTC TGCAGCCTGG ACCATAGTTC CTGGTGCACT
  GTCGTCACTA ATAAGCATCC ACTTGTAGAA AAAAAAAAAA AAAGCACAGA GATCCTCAGT
  ATCTAGCAGA GGTTGCACAG CCAGAAGCTG GCAGAGTAGG AGATTGCAGT CCACCTGTGT
  Y
  CAGTCCAAAG CCTGTGTTTA TCTTGTATTG CTTGTTGGCC CTCTCAGGAG TTGGGGTCCC
  AGGCTAGTCT TCTGGAACCC ATAAAGAGAC ACCTGTGTAA GGAGCCAAGG GAGTTATTTC
  CAAAGGACTA AACACCACAT ACCAAGTTAC CTAGTGCACA TAGCTGTTCA ATAAGGTAGG
  CGCACGCCCA CGCCCATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38964966	mCV23148377	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss138689912	ENSMUSSNP5429263	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29164472					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110340386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5113	CpG island 5113	133 bp distal
Rr472872	regulatory region 472872	within coordinates
Rr472873	regulatory region 472873	352 bp distal
Rr472874	regulatory region 472874	1052 bp proximal
Tssr115196	transcription start site region 115196	1561 bp upstream