rs29164504 SNP Detail

Summary

• ID
  rs29164504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28776806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAA GGCTTCTATC TCATTTTATA
  R
  CCACTCTGTA TGGATATCCA CCATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38962764	mCV22628087	ABI	CRAMUS_MOUSE	f	SNP		G	G					A	G
ss52346827	NES15375478	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	G		A	G	A		A
ss137505108	ENSMUSSNP5155156	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss323972614	CHEV_12_29411672	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29164504					SNP	G	G	G	G	G	G	G	A	G	G	G	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52346827	NES15375478	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28776806 () rs orientation: forward

Symbol	Name	Function Class
Rr260043	regulatory region 260043	1806 bp distal
Rr269361	regulatory region 269361	144 bp distal
Rr269362	regulatory region 269362	181 bp proximal
Trappc12	trafficking protein particle complex 12	within coordinates