rs29164728 SNP Detail

Summary

• ID
  rs29164728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101613814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGT TGTGAGCCAC CATGTGGTTG
  Y
  TGGGATTTGA ACTCTGAACC TTCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38968738	mCV24523774	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss138001598	ENSMUSSNP3753855	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss324141073	CHEV_12_102885765	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29164728					SNP	C	C	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101613814 () rs orientation: forward

Symbol	Name	Function Class
Gm16285	predicted gene 16285	1023 bp downstream
Gm52022	predicted gene, 52022	1724 bp downstream
Tc2n	tandem C2 domains, nuclear	within coordinates
Tssr117358	transcription start site region 117358	1276 bp upstream