rs29164755 SNP Detail

Summary

• ID
  rs29164755
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110818540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGTGAT ATAATTTCCA
  CCAAAGGAGA GCAAACTTAA TCAAAGTTAG CTTGATAGAT TTGCTGGTGG TAGCTGGTGT
  GATGGGGATG GTGAAAACCA GATTCAAATA ATGAAAGAAT GGACCCCTTT GTGGCCTGGT
  GTGCAGGATA ATCTTCCAGC TTAAACTGTG CCCTGATAAC CCAGAGGCCA AGCAGATAAG
  K
  ATTCTGCCCC CAAGGAGTCT GAGGACTAGG AGGAAGTGAC ACAAGACCCA GATGATAGCT
  GGTCAAGGAC AAAAAGCTAG AGATGTAACT AACTGAATAC ATTCAGAAAA AGGAAACGGT
  CTCTGGGAGC ACACAGCTAA TGCTGAAAAG CTAGTGTCTG AGCTAGATTT GCCAGGCTGG
  GTGCCAGCTG GAAATGCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38967932	mCV25034333	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss138693480	ENSMUSSNP3440994	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss324159090	CHEV_12_112090316	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29164755					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110818540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5126	CpG island 5126	791 bp distal
Rr473015	regulatory region 473015	1817 bp distal
Rr473016	regulatory region 473016	1847 bp distal
Tssr115237	transcription start site region 115237	1804 bp downstream
Tssr115238	transcription start site region 115238	1781 bp downstream
Zfp839	zinc finger protein 839	within coordinates