rs29164757 SNP Detail

Summary

• ID
  rs29164757
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112979749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT GTAACCCAGG GTGGCCTTGA
  R
  CTCTCAGTCC TCCTGCCTCT GCCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38967936	mCV24485571	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss324172778	CHEV_12_114254340	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29164757					SNP	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112979749 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5198	CpG island 5198			910 bp distal
Gm61130	predicted gene, 61130			1821 bp upstream
Pacs2	phosphofurin acidic cluster sorting protein 2			Intron
				Noncoding-Transcript-Variant
Rr473706	regulatory region 473706			1832 bp distal
Rr473707	regulatory region 473707			1586 bp distal
Rr473708	regulatory region 473708			1727 bp distal
Rr473709	regulatory region 473709			1426 bp distal
Rr473710	regulatory region 473710			within coordinates
Tssr115451	transcription start site region 115451			1659 bp downstream
Tssr115452	transcription start site region 115452			1616 bp downstream
Tssr115453	transcription start site region 115453			1590 bp downstream
Tssr115454	transcription start site region 115454			1572 bp downstream
Tssr115455	transcription start site region 115455			1561 bp downstream
Tssr117933	transcription start site region 117933			1866 bp upstream