rs29165223 SNP Detail

Summary

• ID
  rs29165223
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53631435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAACAGA TTAGAGTTTG
  GCTTAAAAAA AAAAACCCTA CATTTCTAAA GAAACCTTCC TATGCCTGTT TAATCAAAGT
  TATTCTAAGT TGTCCTTTTG TTTCTGGGTT TCCTAGATTT TCTAAGGCTT TGGGAGAATA
  TTGAAAATGC TCACATTTTT TAATATTAGC AAAAAAATAA ATTGATCTAA AAATTACCAA
  W
  AAAAGAAATC TAAATAAAAC CCCGACATAG GTTGTATCAT GCTGTCAATG ATCAGTGCTA
  CTCTGAGTGA ATGAGGAAAG GTTTGTTGCT CTAAGAGCTC ATGTTGACTA CATAAATGAA
  ATAGTGGGGG TGGGAGGGAT TAAGGTAACA GGAAAATGGA TTCTTGACTA TGAATTAGGG
  TTGAGGAATA TTTTGGTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38960820	mCV22367587	ABI	CRAMUS_MOUSE	f	SNP		T	A					T		T
ss47088623	NES11251040	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T	A		A	T	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29165223					SNP	A	T	A	A	A	T	A	T	A	T	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47088623	NES11251040	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53631435 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256680	regulatory region 256680	566 bp proximal
Rr267627	regulatory region 267627	1967 bp proximal