rs29165564 SNP Detail

Summary

• ID
  rs29165564
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73954674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGC CCGCGGGCGC GCGCGTTGGG
  K
  GCTGAGCGGG CGCGCGCACC CCTCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38967552	mCV24197685	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29165564					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73954674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	within coordinates
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467871	regulatory region 467871	within coordinates
Rr467872	regulatory region 467872	15 bp proximal
Rr467873	regulatory region 467873	70 bp proximal
Rr467874	regulatory region 467874	1314 bp proximal
Tssr113838	transcription start site region 113838	59 bp upstream
Tssr113839	transcription start site region 113839	74 bp upstream
Tssr113840	transcription start site region 113840	155 bp upstream
Tssr113841	transcription start site region 113841	260 bp upstream
Tssr113842	transcription start site region 113842	285 bp upstream
Tssr113843	transcription start site region 113843	475 bp upstream
Tssr113844	transcription start site region 113844	1712 bp upstream