rs29165697 SNP Detail

Summary

• ID
  rs29165697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110664888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTATCA TCGTCCCCAG
  CTGTACTCTC CAGGGCCACT CCTTTTCCCT AAGACTGGCC TTTTGTGTTG GGTGCCAGGA
  CTATTAGGTG TTGATTTTTA ATTGTTTGCA TAAAAACCAC AAGTCAAGCT CCAAGCTGTT
  AGGATCTCTA CCCTAGAAGG GACTTTTGCT TTTTAGTTTT GGTTTTGTGG TCTCCACACC
  R
  GGAATGAACC CAAGGCTACC TATGTGATAC ACTAGGCAAG CTAGGCCCTC CACTGGGCCA
  GAACAGGCTC TCAGTTGCCA ATACTTGCTT TAAGGGAACT TTAGCACAGG CAGACTGAAT
  TTCCATCTTC CTATCTCAGC CTTCCAAGTA GCTGGGACTG AAGGCCAAGA TCTGGCTTAA
  GGTCTCCTGT TATCAATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38969180	mCV24497752	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29165697					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110664888 () rs orientation: forward

Symbol	Name	Function Class
4932703K07Rik	RIKEN cDNA 4932703K07 gene	1338 bp downstream
Cpgi5120	CpG island 5120	1313 bp distal
Gm60092	predicted gene, 60092	611 bp upstream
Rr403501	regulatory region 403501	1852 bp downstream
Rr472969	regulatory region 472969	1569 bp distal
Rr472970	regulatory region 472970	121 bp proximal
Rr472971	regulatory region 472971	622 bp proximal
Rr472972	regulatory region 472972	1259 bp proximal
Tssr115232	transcription start site region 115232	1819 bp downstream
Tssr115233	transcription start site region 115233	600 bp upstream