rs29165901 SNP Detail

Summary

• ID
  rs29165901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:46866560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT CTAAAGGAGA TGTCATCAGA
  R
  GATTTCTTTC TCGCACCGTG TGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38969590	mCV24792182	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss137691494	ENSMUSSNP3719949	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29165901					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:46866560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4580	CpG island 4580	within coordinates
Gm60470	predicted gene, 60470	850 bp upstream
Nova1	NOVA alternative splicing regulator 1	417 bp upstream
Rr465708	regulatory region 465708	859 bp distal
Rr465709	regulatory region 465709	1115 bp distal
Rr465710	regulatory region 465710	358 bp distal
Rr465711	regulatory region 465711	360 bp proximal
Tssr116213	transcription start site region 116213	1681 bp upstream
Tssr116214	transcription start site region 116214	1648 bp upstream
Tssr116215	transcription start site region 116215	1622 bp upstream
Tssr116216	transcription start site region 116216	1420 bp upstream
Tssr116217	transcription start site region 116217	1260 bp upstream
Tssr116218	transcription start site region 116218	989 bp upstream
Tssr116219	transcription start site region 116219	840 bp upstream
Tssr116220	transcription start site region 116220	773 bp upstream
Tssr116221	transcription start site region 116221	751 bp upstream
Tssr116222	transcription start site region 116222	719 bp upstream
Tssr116223	transcription start site region 116223	681 bp upstream
Tssr116224	transcription start site region 116224	573 bp upstream
Tssr116225	transcription start site region 116225	528 bp upstream
Tssr116226	transcription start site region 116226	406 bp upstream
Tssr116227	transcription start site region 116227	279 bp upstream
Tssr116228	transcription start site region 116228	260 bp upstream