rs29166493 SNP Detail

Summary

• ID
  rs29166493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110663800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCACGT GCCCATACAC
  ACACACACTC GCACAGTGTG AAAATAAGTG TAAAGGACTA GAGAGATGGC TGGGAGCAGT
  TAGTGGTGCC AAACACGCAC GTTAAGGCAG CTCACAACCA CCAGTTACTA CAGTTCTTGG
  AAATAAACTA TCCTCTCTGG CCTCCACGGG CACCAGGAAC ACACATGGTG CACAGGCACA
  Y
  GCAGTCAAAA AATGGTCATA TAAAACACTC TATCCTGATT TTTGAAGCAC CTTCATATGG
  TGTACATACG AAGTTACTTT GGGCGATTAA CGTGACCCAA AAGATAGTTT CCTTGTTTGT
  TTATCTTTAA TATAGGCTTC GGTTTCACTC CCCATACCTT TCCTTTGGGT TACTCCCACC
  CTGTATTTCC TATTTCCGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38969430	mCV24498025	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss138692752	ENSMUSSNP1026281	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29166493					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110663800 () rs orientation: forward

Symbol	Name	Function Class
4932703K07Rik	RIKEN cDNA 4932703K07 gene	250 bp downstream
Cpgi5120	CpG island 5120	225 bp distal
Gm60092	predicted gene, 60092	1699 bp upstream
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	971 bp upstream
Rr403501	regulatory region 403501	764 bp downstream
Rr472969	regulatory region 472969	481 bp distal
Rr472970	regulatory region 472970	1209 bp proximal
Rr472971	regulatory region 472971	1710 bp proximal
Tssr115230	transcription start site region 115230	1452 bp downstream
Tssr115231	transcription start site region 115231	1416 bp downstream
Tssr115232	transcription start site region 115232	731 bp downstream
Tssr115233	transcription start site region 115233	1688 bp upstream
Tssr117786	transcription start site region 117786	1558 bp upstream
Tssr117787	transcription start site region 117787	1507 bp upstream
Tssr117788	transcription start site region 117788	1490 bp upstream
Tssr117789	transcription start site region 117789	1104 bp upstream
Tssr117790	transcription start site region 117790	1047 bp upstream
Tssr117791	transcription start site region 117791	948 bp upstream
Tssr117792	transcription start site region 117792	919 bp upstream