rs29167152 SNP Detail

Summary

• ID
  rs29167152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53861117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTGGGG GGTGGAAGGG
  GCTGGAGCAC TCCTCACCTC TCCCCAGCCT CCTGGAGGTG AATAATCCAA CACACTTAAC
  TGTTCCTTTA AAACTTTTAT TTTTTAAATC ACCTAAATCA TTCTTCCAGT CCTCTTCTGG
  AGCTTTCTAA ATTCTTCTTT CGGTCCCCAG AACTAAATGT ATTTAAAGTT CTCAAAACCA
  Y
  GCAGAAGAAA ACAGGAAAAA TAACTTGAGT CTAAAAATCC AGTGCTGATA GCTCCCACTT
  AGAGTCAGCC GCCCCACGTG TACAGGGAAC AGTGTAGTGT ACACACATAC AAGCCAGCAC
  ACAGGCATGT TGGCATGTGC ATTCCTAGCA TTGCAGAGGC ACCAGCCTTC TTCAGAGCCA
  CAGAGTACAA GACTTGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38968648	mCV22363427	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss137760098	ENSMUSSNP6611612	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29167152					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53861117 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	917 bp distal
Rr267638	regulatory region 267638	1518 bp distal