rs29167327 SNP Detail

Summary

• ID
  rs29167327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100805787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCA CTCTGGCTGA TCAGCAGTCT
  Y
  CAGGCCTCCC TGTGCACAAG ACCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38961461	mCV24923661	ABI	CRAMUS_MOUSE	f	SNP	C				C	T
ss47235929	NES11413930	PERLEGEN	MM_PANEL2	f	SNP		C	C	C			C		T	C	C	C
ss137996618	ENSMUSSNP3762806	ENSEMBL	ENSEMBL_Sanger	f	SNP						T
ss324138598	CHEV_12_102077738	CHEVERUD	SCREENING_POP	f	SNP								C					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29167327					SNP	C	C	C	C	C	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47235929	NES11413930	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100805787 () rs orientation: forward

Symbol	Name	Function Class
Dglucy	D-glutamate cyclase	within coordinates
Rr403460	regulatory region 403460	1711 bp upstream
Rr471349	regulatory region 471349	1882 bp distal
Rr471350	regulatory region 471350	1349 bp distal
Rr471351	regulatory region 471351	within coordinates
Rr471352	regulatory region 471352	335 bp proximal
Rr471353	regulatory region 471353	1875 bp proximal