rs29167354 SNP Detail

Summary

• ID
  rs29167354
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69276057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA AAGGAAAACA GTAAAAAGAA
  W
  GCATGTGTAT ATTTGCTTGA TTTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38967832	mCV22784587	ABI	CRAMUS_MOUSE	f	SNP			A					T
ss51013753	NES14402694	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	T	A	A		A	A	A	A		T
ss137856420	ENSMUSSNP1717648	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							T
ss324083401	CHEV_12_70330270	CHEVERUD	SCREENING_POP	f	SNP													T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29167354					SNP	A	A	A	A	A	A	A	T	A	T	A	A	T	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51013753	NES14402694	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69276057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	997 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	1088 bp upstream
Rr403319	regulatory region 403319	969 bp downstream
Rr467012	regulatory region 467012	1347 bp distal
Rr467013	regulatory region 467013	640 bp distal
Rr467014	regulatory region 467014	1071 bp distal
Rr467015	regulatory region 467015	38 bp proximal
Rr467016	regulatory region 467016	130 bp proximal
Tssr113624	transcription start site region 113624	642 bp downstream
Tssr116494	transcription start site region 116494	1099 bp upstream