rs29167641 SNP Detail

Summary

• ID
  rs29167641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:51741259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCTAAC AGTTCAGCTT
  GCCTAACTGG AATTCTCTCT CTGACCCCTT GCTGAGTCAT TTCCTCTCTT CAGTCCCCTT
  TGAAACTTCC TATTTATCCT GTCCTCTCAC CTGTCACTCC TCCCTGCTCC TGCCTAGATT
  CTCCTTCTTT CAGAATGATT TGGGGTAGGT GGAGGGTAAA ATGGTGTGCT GCCCTTGAGT
  R
  TGAGATTCTC CTGTTTCTGC CACCCAAGTG CTGGGATTGC AAATGGACTT CAGCTTGCTC
  AGTTCATGAT GATCTTCATG AAAGTCTATG TATGGCTGCT CGGTACTTTC TGCACTGGGG
  AGGCTGAGCC AGAATTATTG CTGAGAGTCT GAACCCTGAG TCATGTGAAG AATTCTAGGC
  TAGACTAAAG TACACAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss38969674	mCV24841401	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss137724506	ENSMUSSNP1321533	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs29167641					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:51741259 () rs orientation: forward

Symbol	Name	Function Class
Ap4s1	adaptor-related protein complex AP-4, sigma 1	within coordinates
Cpgi4590	CpG island 4590	1921 bp distal
Gm61171	predicted gene, 61171	1887 bp downstream
Rr256575	regulatory region 256575	942 bp proximal
Rr265419	regulatory region 265419	1258 bp distal
Tssr113422	transcription start site region 113422	1830 bp downstream