rs29167831 SNP Detail

Summary

• ID
  rs29167831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27388860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACACTCAGA ATGCCTTTTC CTTAGGCTTC AGAATCTGTC
  CCCAGTAAAC CGCTGGTGAA ATTATTCGCG GCTTAAAGGT CCCCGCGTGG CTCACAGCAG
  R
  GCGCTGTGGG GGAGGGGTGG GCGAGGGAAG CCCGAAAAAG CCACACCGGG TCGCCGCCCC
  ACCCACGCGC TATGAGATCG CGCTGCTCCG TGAGGGCGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38967868	mCV22640856	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss137464436	ENSMUSSNP336489	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29167831					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27388860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	within coordinates
Rr464225	regulatory region 464225	1566 bp distal
Rr464226	regulatory region 464226	within coordinates
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113044	transcription start site region 113044	502 bp upstream
Tssr115969	transcription start site region 115969	1929 bp upstream
Tssr115970	transcription start site region 115970	1894 bp upstream
Tssr115971	transcription start site region 115971	1838 bp upstream
Tssr115972	transcription start site region 115972	1725 bp upstream
Tssr115973	transcription start site region 115973	1363 bp upstream
Tssr115974	transcription start site region 115974	1306 bp upstream
Tssr115975	transcription start site region 115975	1275 bp upstream
Tssr115976	transcription start site region 115976	1255 bp upstream
Tssr115977	transcription start site region 115977	1237 bp upstream
Tssr115978	transcription start site region 115978	611 bp upstream
Tssr115979	transcription start site region 115979	521 bp upstream
Tssr115980	transcription start site region 115980	343 bp upstream
Tssr115981	transcription start site region 115981	322 bp downstream
Tssr115982	transcription start site region 115982	545 bp downstream
Tssr115983	transcription start site region 115983	1323 bp downstream
Tssr115984	transcription start site region 115984	1338 bp downstream
Tssr115985	transcription start site region 115985	1396 bp downstream
Tssr115986	transcription start site region 115986	1412 bp downstream
Tssr115987	transcription start site region 115987	1433 bp downstream
Tssr115988	transcription start site region 115988	1460 bp downstream
Tssr115989	transcription start site region 115989	1508 bp downstream
Tssr115990	transcription start site region 115990	1579 bp downstream
Tssr115991	transcription start site region 115991	1666 bp downstream
Tssr115992	transcription start site region 115992	1757 bp downstream
Tssr115993	transcription start site region 115993	1858 bp downstream
Tssr115994	transcription start site region 115994	1875 bp downstream
Tssr115995	transcription start site region 115995	1892 bp downstream