rs29167952 SNP Detail

Summary

• ID
  rs29167952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27387755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATT CTGAAGTGAA GAACAAATGT
  Y
  CATTTCTTAC ACTGTTCTAG TATCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38962704	mCV22640866	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss137464430	ENSMUSSNP6610035	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss323959679	CHEV_12_28022621	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29167952					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27387755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	991 bp proximal
Rr464224	regulatory region 464224	1604 bp distal
Rr464225	regulatory region 464225	461 bp distal
Rr464226	regulatory region 464226	38 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	1533 bp downstream
Tssr113043	transcription start site region 113043	1383 bp downstream
Tssr113044	transcription start site region 113044	1607 bp upstream
Tssr115963	transcription start site region 115963	1692 bp upstream
Tssr115964	transcription start site region 115964	1317 bp upstream
Tssr115965	transcription start site region 115965	1268 bp upstream
Tssr115966	transcription start site region 115966	1189 bp upstream
Tssr115967	transcription start site region 115967	919 bp upstream
Tssr115968	transcription start site region 115968	905 bp upstream
Tssr115969	transcription start site region 115969	824 bp upstream
Tssr115970	transcription start site region 115970	789 bp upstream
Tssr115971	transcription start site region 115971	733 bp upstream
Tssr115972	transcription start site region 115972	620 bp upstream
Tssr115973	transcription start site region 115973	258 bp upstream
Tssr115974	transcription start site region 115974	201 bp upstream
Tssr115975	transcription start site region 115975	170 bp upstream
Tssr115976	transcription start site region 115976	150 bp upstream
Tssr115977	transcription start site region 115977	132 bp upstream
Tssr115978	transcription start site region 115978	487 bp downstream
Tssr115979	transcription start site region 115979	579 bp downstream
Tssr115980	transcription start site region 115980	746 bp downstream
Tssr115981	transcription start site region 115981	1427 bp downstream
Tssr115982	transcription start site region 115982	1650 bp downstream