rs29169171 SNP Detail

Summary

• ID
  rs29169171
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112685390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTAGACTTGC TAAGCCTATG TGTTTGTTTG TTTCTCTGTT TTCAAGTTCA CCCATGCTGT
  AGCACTTGCC AAAACTTCTT TCCTTTTTGA GATTAATCAT AGGTTACCAC ACATGGACAC
  ATCTATCCAC TCGCCTGGAT ACAGGCATTA GCTGTGTTTC CTTCTTGGCT GTTGTGAATC
  GTGTCACTAG GTTGGTGAAT GCTACGGGGT GGAGGGGAGA ACCCCCAAAA TTCCTTTATT
  TGCTTCATTT GCTTTCAGCT GGCTTTAAAG TCGCTAAGTC TGGGAGTCAC ACAGCTGGGC
  M
  GTCGGTGAGT GGTGTCTGTA ACTTCAGAAG TAATTGCTCA GACCCTGAGC TGTGACATCG
  GTCCCCTGGC TTACTTTCCA GGGACGCAAA GGCTGTTCCT GAAAACACTG ACTCTCGTCC
  GAATATATGT GATGGGTTGT TGGGAGTAGC TGAAAAGATT TGTTGCTTTC ACCTTAATCT
  CTGTTTGCCC TGCAAGGAGG CTCATTGGTC CCGAGGGACC TCCCCTTTTA GCACTTGCAA
  CAGTGTTAGC AGCTATAGTT CTCTGGTAAC ACCCTCCTCC TCCTTCACTA CCTCACCCCA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss38971166	mCV24923808	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29169171					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112685390 () rs orientation: forward

Symbol	Name	Function Class
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473581	regulatory region 473581	1528 bp distal
Rr473582	regulatory region 473582	1617 bp distal
Rr473583	regulatory region 473583	1684 bp proximal
Tssr115398	transcription start site region 115398	281 bp upstream