rs29169702 SNP Detail

Summary

• ID
  rs29169702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27210258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCTCCTATC AGCACGGCAG AGGCATGGCC CAGACAGCCC
  ACATTATCTG AGTCCCCCAT TCCCGACTCA CCTGAGCAGC GCTACCCAGG TCCGGCTTCC
  Y
  CAGACTCCCA GCCTGGAGAG CTCTGTCTCA TCTCAGAGGC AGTGTGCAGT GCGCTTTTCC
  CTGTAGCCCG GCAGCCGTCA AAACACTCTC CAGACTGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38978965	mCV22644699	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29169702					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27210258 () rs orientation: forward

Symbol	Name	Function Class
Silc1	sciatic injury induced lincRNA upregulator of SOX11	within coordinates
Tssr115957	transcription start site region 115957	188 bp downstream
Tssr115958	transcription start site region 115958	218 bp downstream
Tssr115959	transcription start site region 115959	239 bp downstream