rs29169953 SNP Detail

Summary

• ID
  rs29169953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:74849887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT TTCATCTTAC AGTTTACCAT
  Y
  CTTCCTGAAG GGAAGTCAGG GCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38974183	mCV23602241	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss324100942	CHEV_12_75904100	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29169953					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:74849887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4766	CpG island 4766	820 bp proximal
Tssr113890	transcription start site region 113890	752 bp upstream
Tssr113891	transcription start site region 113891	1024 bp upstream
Tssr113892	transcription start site region 113892	1107 bp upstream
Tssr113893	transcription start site region 113893	1157 bp upstream
Tssr113894	transcription start site region 113894	1210 bp upstream
Tssr113895	transcription start site region 113895	1268 bp upstream
Tssr116673	transcription start site region 116673	855 bp downstream