rs29170571 SNP Detail

Summary

• ID
  rs29170571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107090754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG CAGAAGTTCC ATTCACCCCT
  R
  GGTTACCATC TCTACCGTCG GAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38973421	mCV22891482	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss138024995	ENSMUSSNP5439960	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss324146397	CHEV_12_108362705	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29170571					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107090754 () rs orientation: forward

Symbol	Name	Function Class
Gm16084	predicted gene 16084	within coordinates
Rr369596	regulatory region 369596	within coordinates
Rr369597	regulatory region 369597	1689 bp upstream
Rr472319	regulatory region 472319	577 bp distal
Rr472320	regulatory region 472320	within coordinates
Tssr114936	transcription start site region 114936	39 bp downstream
Tssr117620	transcription start site region 117620	775 bp upstream