rs29171084 SNP Detail

Summary

• ID
  rs29171084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111504087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA GCTACACAAA AAAAGGTTTC
  Y
  ATCGTGGGAA ACCTCAGAGC CACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38978008	mCV24937693	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss138696524	ENSMUSSNP1844304	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss324159940	CHEV_12_112775864	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29171084					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111504087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	448 bp upstream
Gm56546	predicted gene, 56546	within coordinates
Gm58608	predicted gene, 58608	363 bp upstream
Gm60631	predicted gene, 60631	866 bp downstream
Rr403512	regulatory region 403512	174 bp upstream
Tssr115316	transcription start site region 115316	1993 bp downstream
Tssr115317	transcription start site region 115317	1607 bp downstream
Tssr115318	transcription start site region 115318	1542 bp downstream
Tssr115319	transcription start site region 115319	448 bp downstream
Tssr115320	transcription start site region 115320	496 bp upstream
Tssr115321	transcription start site region 115321	611 bp upstream
Tssr115322	transcription start site region 115322	678 bp upstream
Tssr115323	transcription start site region 115323	816 bp upstream
Tssr115324	transcription start site region 115324	1132 bp upstream
Tssr115325	transcription start site region 115325	1166 bp upstream
Tssr115326	transcription start site region 115326	1781 bp upstream
Tssr117828	transcription start site region 117828	264 bp downstream
Tssr117829	transcription start site region 117829	926 bp downstream