rs29171386 SNP Detail

Summary

• ID
  rs29171386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32984888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTTCG CTGGCCTCTG
  ACCTCTGCTT ACTTCCCTAG CCTATACAGA CGGACATTGC TAATTTGAAT GGTAATCAGC
  AACTACTTCT ACAAGAAAGC AGTGTAGGAT TCAATATAAA AAATGTCACT AATCACTTGT
  ACGCAGACTC AGGATAACTC CTACCTAGTG AGCATTCCCT CTGGGTCCCA GAGAGCCACA
  Y
  AATCTCTCAG TTGTCCTTAT AGCCACTGCT GTTTCAAGCT TCTGAACATT TCCATATAAA
  ACATCCATGA TGGGGCTGGA GAGATGCTTA CTGGTGAAGA GCACCTGGTG CCCTGGTAAA
  GGGCCGAGGT TCAGTTCCCA GCACCCACAT GAAGGCACAC AACCATCTGT AACTCCTGCT
  CCAGGAGATC CAACACCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38978615	mCV22591967	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss50970099	NES14418539	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	T	T	C	T	T	C	T
ss137579223	ENSMUSSNP3644402	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29171386					SNP	C	C	C	C	C	C	C	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50970099	NES14418539	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32984888 () rs orientation: forward

Symbol	Name	Function Class
4933406C10Rik	RIKEN cDNA 4933406C10 gene	within coordinates
Gm51998	predicted gene, 51998	1983 bp upstream
Rr464834	regulatory region 464834	1768 bp proximal