rs29171465 SNP Detail

Summary

• ID
  rs29171465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107093724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC TGCAGTCCAT TCTATGAGGT
  Y
  ATCTTTCCAG AAGAAAAGGC AGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38972033	mCV22891513	ABI	CRAMUS_MOUSE	f	SNP		C	T						C
ss61696988	NES17648998	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	C	T	C		C	T	C		T
ss138025005	ENSMUSSNP806189	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss324146403	CHEV_12_108365675	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29171465					SNP	C	C	T	T	T	C	T	C	C	T	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61696988	NES17648998	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107093724 () rs orientation: forward

Symbol	Name	Function Class
Gm16084	predicted gene 16084	within coordinates
Rr369597	regulatory region 369597	1098 bp downstream