rs29171767 SNP Detail

Summary

• ID
  rs29171767
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:26495323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTC TAATAACAAC AGTCCGTAGA
  Y
  AGCCAGAAGA TGTAGCTTGT TGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38975431	mCV24521340	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss137439015	ENSMUSSNP3728589	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss323950904	CHEV_12_27130189	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29171767					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26495323 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	935 bp distal
Rr464137	regulatory region 464137	1051 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	mRNA-UTR
Tssr112998	transcription start site region 112998	1571 bp downstream
Tssr112999	transcription start site region 112999	1506 bp downstream
Tssr113000	transcription start site region 113000	1405 bp downstream
Tssr113001	transcription start site region 113001	918 bp downstream
Tssr113002	transcription start site region 113002	894 bp downstream
Tssr113003	transcription start site region 113003	806 bp downstream
Tssr113004	transcription start site region 113004	755 bp downstream
Tssr113005	transcription start site region 113005	746 bp downstream
Tssr113006	transcription start site region 113006	379 bp downstream
Tssr113007	transcription start site region 113007	289 bp downstream
Tssr113008	transcription start site region 113008	121 bp downstream
Tssr113009	transcription start site region 113009	106 bp downstream
Tssr113010	transcription start site region 113010	30 bp upstream
Tssr115905	transcription start site region 115905	1802 bp upstream
Tssr115906	transcription start site region 115906	1682 bp upstream
Tssr115907	transcription start site region 115907	1623 bp upstream
Tssr115908	transcription start site region 115908	1579 bp upstream
Tssr115909	transcription start site region 115909	1495 bp upstream
Tssr115910	transcription start site region 115910	1441 bp upstream
Tssr115911	transcription start site region 115911	1393 bp upstream
Tssr115912	transcription start site region 115912	1379 bp upstream
Tssr115913	transcription start site region 115913	1344 bp upstream
Tssr115914	transcription start site region 115914	1296 bp upstream
Tssr115915	transcription start site region 115915	1253 bp upstream
Tssr115916	transcription start site region 115916	1212 bp upstream
Tssr115917	transcription start site region 115917	1162 bp upstream
Tssr115918	transcription start site region 115918	1147 bp upstream
Tssr115919	transcription start site region 115919	1116 bp upstream
Tssr115920	transcription start site region 115920	1084 bp upstream
Tssr115921	transcription start site region 115921	708 bp upstream
Tssr115922	transcription start site region 115922	683 bp upstream
Tssr115923	transcription start site region 115923	590 bp upstream
Tssr115924	transcription start site region 115924	530 bp upstream
Tssr115925	transcription start site region 115925	515 bp upstream
Tssr115926	transcription start site region 115926	164 bp upstream
Tssr115927	transcription start site region 115927	123 bp upstream
Tssr115928	transcription start site region 115928	1848 bp downstream
Tssr115929	transcription start site region 115929	1878 bp downstream