rs29171792 SNP Detail

Summary

• ID
  rs29171792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8061074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTAAACA TACCTTTAAC
  AATTCCTGAA ATTAACTTGC CTTACACGGA GTTCAAAACT CCCTTACTGA AGGATTTCTC
  CATATGGGAA GAAACAGGCT TGAAAGAATT TTTGAAGACA ACAAAGCAAT CATTTGATTT
  GAGTGTAAAG GCTCAATATA AAAAGAACAG TGACAAGCAT TCCATTGTTG TCCCTCTGGG
  Y
  ATGTTTTATG AATTTATTCT CAACAATGTC AATTCGTGGG ACAGAAAATT TGAGAAAGTC
  AGAAACAATG CTTTACATTT TCTTACCACC TCCTATAATG AAGCAAAAAT TAAGGTTGAT
  AAGTACAAAA CTGAAAATTC CCTTAATCAG CCCTCTGGGA CCTTTCAAAA TCATGGCTAC
  ACTATCCCAG TTGTCAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ
ss38977044	mCV24183296	ABI	CRAMUS_MOUSE	f	SNP		T	C			T		T
ss50958140	NES14429021	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T		T	T	T	C
ss137107633	ENSMUSSNP4234111	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ
rs29171792					SNP	T	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958140	NES14429021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8061074 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112649	transcription start site region 112649	1977 bp downstream
Tssr112650	transcription start site region 112650	1897 bp downstream
Tssr112651	transcription start site region 112651	1845 bp downstream
Tssr112652	transcription start site region 112652	1815 bp downstream
Tssr112653	transcription start site region 112653	1796 bp downstream
Tssr112654	transcription start site region 112654	1782 bp downstream
Tssr112655	transcription start site region 112655	1759 bp downstream
Tssr112656	transcription start site region 112656	1739 bp downstream
Tssr112657	transcription start site region 112657	1725 bp downstream
Tssr112658	transcription start site region 112658	1692 bp downstream
Tssr112659	transcription start site region 112659	1613 bp downstream
Tssr112660	transcription start site region 112660	1489 bp downstream
Tssr112661	transcription start site region 112661	1254 bp downstream
Tssr112662	transcription start site region 112662	1013 bp downstream
Tssr112663	transcription start site region 112663	772 bp downstream
Tssr112664	transcription start site region 112664	748 bp downstream
Tssr112665	transcription start site region 112665	593 bp downstream
Tssr112666	transcription start site region 112666	573 bp downstream
Tssr112667	transcription start site region 112667	524 bp downstream
Tssr112668	transcription start site region 112668	388 bp downstream
Tssr112669	transcription start site region 112669	301 bp downstream
Tssr112670	transcription start site region 112670	245 bp downstream
Tssr112671	transcription start site region 112671	142 bp downstream
Tssr112672	transcription start site region 112672	428 bp upstream
Tssr112673	transcription start site region 112673	471 bp upstream
Tssr112674	transcription start site region 112674	572 bp upstream
Tssr112675	transcription start site region 112675	599 bp upstream
Tssr112676	transcription start site region 112676	702 bp upstream
Tssr112677	transcription start site region 112677	852 bp upstream
Tssr112678	transcription start site region 112678	976 bp upstream
Tssr112679	transcription start site region 112679	1001 bp upstream
Tssr112680	transcription start site region 112680	1020 bp upstream
Tssr112681	transcription start site region 112681	1067 bp upstream
Tssr112682	transcription start site region 112682	1080 bp upstream
Tssr112683	transcription start site region 112683	1117 bp upstream
Tssr112684	transcription start site region 112684	1161 bp upstream
Tssr112685	transcription start site region 112685	1209 bp upstream
Tssr112686	transcription start site region 112686	1257 bp upstream
Tssr112687	transcription start site region 112687	1337 bp upstream
Tssr112688	transcription start site region 112688	1438 bp upstream
Tssr112689	transcription start site region 112689	1480 bp upstream
Tssr112690	transcription start site region 112690	1505 bp upstream
Tssr112691	transcription start site region 112691	1556 bp upstream
Tssr112692	transcription start site region 112692	1592 bp upstream
Tssr112693	transcription start site region 112693	1611 bp upstream
Tssr112694	transcription start site region 112694	1749 bp upstream
Tssr112695	transcription start site region 112695	1968 bp upstream