rs29171957 SNP Detail

Summary

• ID
  rs29171957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82291029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC AAAGGAACTC GCACTATATG
  Y
  ACTCACTGAT ACGTGGATAT TAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38979059	mCV23642038	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss137922552	ENSMUSSNP3076066	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss324112455	CHEV_12_83345242	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29171957					SNP	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82291029 () rs orientation: forward

Symbol	Name	Function Class
Rr261652	regulatory region 261652	within coordinates
Rr268532	regulatory region 268532	772 bp proximal
Rr403397	regulatory region 403397	1185 bp upstream
Sipa1l1	signal-induced proliferation-associated 1 like 1	within coordinates
Tssr114221	transcription start site region 114221	387 bp upstream
Tssr114222	transcription start site region 114222	1263 bp upstream
Tssr114223	transcription start site region 114223	1430 bp upstream
Tssr114224	transcription start site region 114224	1475 bp upstream
Tssr114225	transcription start site region 114225	1551 bp upstream
Tssr116943	transcription start site region 116943	1143 bp downstream