rs29172529 SNP Detail

Summary

• ID
  rs29172529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111504598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA AGCGGTGGCT GCCCGGTACA
  R
  GGGGCGGGCT CCGGGGCCGA GGGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38980679	mCV24937681	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss324159946	CHEV_12_112776375	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29172529					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111504598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	within coordinates
Gm56546	predicted gene, 56546	within coordinates
Gm58608	predicted gene, 58608	within coordinates
Gm60631	predicted gene, 60631	355 bp downstream
Rr403512	regulatory region 403512	36 bp downstream
Rr473213	regulatory region 473213	within coordinates
Rr473214	regulatory region 473214	567 bp proximal
Rr473215	regulatory region 473215	629 bp proximal
Tssr115319	transcription start site region 115319	959 bp downstream
Tssr115320	transcription start site region 115320	within coordinates
Tssr115321	transcription start site region 115321	100 bp upstream
Tssr115322	transcription start site region 115322	167 bp upstream
Tssr115323	transcription start site region 115323	305 bp upstream
Tssr115324	transcription start site region 115324	621 bp upstream
Tssr115325	transcription start site region 115325	655 bp upstream
Tssr115326	transcription start site region 115326	1270 bp upstream
Tssr117828	transcription start site region 117828	208 bp upstream
Tssr117829	transcription start site region 117829	415 bp downstream