rs29172701 SNP Detail

Summary

• ID
  rs29172701
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20970538 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTCA GGTCCTTTGC TCCCATCCTC
  R
  GAGAGGTCAA CTTCGGCTGC AGAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss38973723	mCV24849485	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss137286938	ENSMUSSNP7119399	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29172701					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20970538 () rs orientation: reverse

Symbol	Name	Function Class
3110053B16Rik	RIKEN cDNA 3110053B16 gene	within coordinates
Cpgi4472	CpG island 4472	229 bp proximal
Rr463638	regulatory region 463638	within coordinates
Rr463639	regulatory region 463639	508 bp proximal
Rr463640	regulatory region 463640	932 bp proximal
Rr463641	regulatory region 463641	979 bp proximal
Tssr115849	transcription start site region 115849	508 bp downstream
Tssr115850	transcription start site region 115850	681 bp downstream
Tssr115851	transcription start site region 115851	718 bp downstream