rs29172838 SNP Detail

Summary

• ID
  rs29172838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109677156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG GTATCCAGCC CAGCCATCCA
  R
  TCCATACCAT CCTCGAGCAA GCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38975058	mCV24948337	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss324156180	CHEV_12_110948932	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29172838					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109677156 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	within coordinates
Gm54365	predicted gene, 54365	1057 bp downstream
Mir299a	microRNA 299a	22 bp downstream
Mir299b	microRNA 299b	29 bp upstream
Mir323	microRNA 323	1786 bp upstream
Mir379	microRNA 379	1597 bp downstream
Mir380	microRNA 380	1081 bp upstream
Mir411	microRNA 411	466 bp downstream
Mir1197	microRNA 1197	1595 bp upstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc44	microRNA cluster 44, including Mir1197 through Mir758	1595 bp proximal
Rr262534	regulatory region 262534	1243 bp proximal
Tssr115174	transcription start site region 115174	1596 bp downstream
Tssr115175	transcription start site region 115175	1112 bp downstream