rs29173076 SNP Detail

Summary

• ID
  rs29173076
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT GGCTGGTCCT GCAGGCAGCA
  S
  TTTCACTGTC TTTGTACCTC ACAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38975699	mCV23219077	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss138725636	ENSMUSSNP4231494	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
ss324170103	CHEV_12_113914563	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29173076					SNP	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642786 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1520 bp upstream
Cpgi5173	CpG island 5173	1443 bp distal
Cpgi5174	CpG island 5174	1751 bp proximal
Gm30150	predicted gene, 30150	382 bp downstream
Rr369631	regulatory region 369631	813 bp downstream
Rr473554	regulatory region 473554	1931 bp distal
Rr473555	regulatory region 473555	1952 bp distal
Rr473556	regulatory region 473556	405 bp distal
Rr473557	regulatory region 473557	1349 bp distal
Rr473558	regulatory region 473558	884 bp distal
Rr473559	regulatory region 473559	693 bp distal
Rr473560	regulatory region 473560	447 bp distal
Rr473561	regulatory region 473561	1974 bp proximal
Rr473562	regulatory region 473562	1986 bp proximal
Tssr115391	transcription start site region 115391	1929 bp downstream
Tssr117880	transcription start site region 117880	1985 bp upstream
Tssr117881	transcription start site region 117881	1967 bp upstream
Tssr117882	transcription start site region 117882	1588 bp upstream
Tssr117883	transcription start site region 117883	1538 bp upstream
Tssr117884	transcription start site region 117884	1515 bp upstream