rs29174322 SNP Detail

Summary

• ID
  rs29174322
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8061670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGA GGGAACATCA CGTCTGATGC
  R
  AAAAAGGGGA TTGAAACTAG CCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38982962	mCV24183294	ABI	CRAMUS_MOUSE	f	SNP		A				G		G
ss50958136	NES14429027	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G		G	G	G	G	G	G	A	G	G
ss137107639	ENSMUSSNP3382549	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29174322					SNP	G	A	A	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958136	NES14429027	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8061670 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112661	transcription start site region 112661	1850 bp downstream
Tssr112662	transcription start site region 112662	1609 bp downstream
Tssr112663	transcription start site region 112663	1368 bp downstream
Tssr112664	transcription start site region 112664	1344 bp downstream
Tssr112665	transcription start site region 112665	1189 bp downstream
Tssr112666	transcription start site region 112666	1169 bp downstream
Tssr112667	transcription start site region 112667	1120 bp downstream
Tssr112668	transcription start site region 112668	984 bp downstream
Tssr112669	transcription start site region 112669	897 bp downstream
Tssr112670	transcription start site region 112670	841 bp downstream
Tssr112671	transcription start site region 112671	738 bp downstream
Tssr112672	transcription start site region 112672	156 bp downstream
Tssr112673	transcription start site region 112673	88 bp downstream
Tssr112674	transcription start site region 112674	13 bp downstream
Tssr112675	transcription start site region 112675	3 bp upstream
Tssr112676	transcription start site region 112676	106 bp upstream
Tssr112677	transcription start site region 112677	256 bp upstream
Tssr112678	transcription start site region 112678	380 bp upstream
Tssr112679	transcription start site region 112679	405 bp upstream
Tssr112680	transcription start site region 112680	424 bp upstream
Tssr112681	transcription start site region 112681	471 bp upstream
Tssr112682	transcription start site region 112682	484 bp upstream
Tssr112683	transcription start site region 112683	521 bp upstream
Tssr112684	transcription start site region 112684	565 bp upstream
Tssr112685	transcription start site region 112685	613 bp upstream
Tssr112686	transcription start site region 112686	661 bp upstream
Tssr112687	transcription start site region 112687	741 bp upstream
Tssr112688	transcription start site region 112688	842 bp upstream
Tssr112689	transcription start site region 112689	884 bp upstream
Tssr112690	transcription start site region 112690	909 bp upstream
Tssr112691	transcription start site region 112691	960 bp upstream
Tssr112692	transcription start site region 112692	996 bp upstream
Tssr112693	transcription start site region 112693	1015 bp upstream
Tssr112694	transcription start site region 112694	1153 bp upstream
Tssr112695	transcription start site region 112695	1372 bp upstream