rs29174669 SNP Detail

Summary

• ID
  rs29174669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33203770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAAAAGG TTTCCCAGCC
  GACCTGCAGA GGGTGGCTGA GCTGAGGATG GGCGGTTGGA GCCAGCCACT CCACTTGGGG
  AAATAGGAAG TTTTTGGAAT GAGAGTCTCT CTATACTAAC AAGGATTTCC CTGTACCCAG
  ATCCTGGGTA GAAAGCCAGA AGAAATGTGG CTTCCCTTCC TTCCAGAACA GGAAGTTAGA
  Y
  AGAATCCGCA GGCTTGGAAA CTGGATATAA TCATTCCTTA AAGGCACGAG TTGGATCAGG
  CCTTCATCTC TAAAGGAATA ATGAGTTGTT GTTGTTTATT CTTTAGCTTT GAAGGCGTAG
  GCCTTAAATT CATCTAAAAA CTGCTTCAAA ATAATCTCCA AGTTATAAAA GTCAAGAGTC
  TTATATATAC TTTACTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38988350	mCV23134807	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss137582778	ENSMUSSNP6950389	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29174669					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33203770 () rs orientation: forward

Symbol	Name	Function Class
Atxn7l1	ataxin 7-like 1	within coordinates
Rr260247	regulatory region 260247	1970 bp distal
Rr260248	regulatory region 260248	1170 bp distal
Rr267129	regulatory region 267129	within coordinates