rs29175296 SNP Detail

Summary

• ID
  rs29175296
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107890643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCATGGTAT GTGTCACAGA AAGTGCCACC ACCAGGTTTC
  ATGGAATCCC TGTTTCCTCC CTGCCTGAGC TTCCACATGC TGTCAGGCCC TTTTAATGAT
  K
  GACACCAGGC TGGATCACCA TTCTCTGACC TTGGTCTTTT TATATCTGAA CCACACGCGA
  GGAGGAGTCT TTTCAGACTT CTTAGGAAAA AGGAAATCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38985367	mCV22553449	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		T
ss47276352	NES11395008	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	T	G	G	G		G	G	G	G
ss138671154	ENSMUSSNP1325045	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29175296					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276352	NES11395008	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107890643 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
MCA1	DNA segment, MCA1, multiple CA repeat 1	589 bp distal
Rr369605	regulatory region 369605	1789 bp upstream