rs29175327 SNP Detail

Summary

• ID
  rs29175327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109678927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG AAGAGCCAGT GTCCCGGTCT
  Y
  CCTACTGCTG CTGCTTGGTA CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38990164	mCV24948322	ABI	CRAMUS_MOUSE	f	SNP		T	C				T		C
ss51053019	NES14374818	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C		C	C	T	C		C	T		C
ss138683781	ENSMUSSNP4321270	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss324156182	CHEV_12_110950703	CHEVERUD	SCREENING_POP	f	SNP												C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29175327					SNP	T	T	C	T	T	C	T	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51053019	NES14374818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109678927 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	within coordinates
Gm54365	predicted gene, 54365	603 bp upstream
Mir299a	microRNA 299a	1793 bp downstream
Mir299b	microRNA 299b	1800 bp upstream
Mir323	microRNA 323	15 bp upstream
Mir329	microRNA 329	988 bp upstream
Mir380	microRNA 380	630 bp downstream
Mir758	microRNA 758	317 bp upstream
Mir1197	microRNA 1197	57 bp downstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc44	microRNA cluster 44, including Mir1197 through Mir758	within coordinates
Rr262534	regulatory region 262534	within coordinates