rs29176171 SNP Detail

Summary

• ID
  rs29176171
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69837191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGACCT CTCTCGAGCC
  TCATCAAGTA AGGGCTGTCG TCCGCGATCT AGAGAAAACA AGGCGCGAGT TAAAGAATAA
  GGATCAGCCA GGTGTGGACT CCACCCCCAC CCAGCAATGA CATCGCGGTC AAGGCTGGGA
  GTCTACAGGT GGCTGCCATG GGTGACCTAA TTTCAGTTGT CTGTTTCATT CCCTCGAGCT
  M
  AAGATGTAGC CAGCATCCAA AAACGAGCCG AGCTGTAAGA TAATCTATCT TTTTAACGTT
  ATGGTTCATA CGATCTAAGA CACTTGAGCT GGCTGGAGCA CCAGGAAGGC GAAGGGCTTC
  CCCGGTTCTA GTTTCGGGTC TCAATTCCCT CCGGAAGAGG ACACCGGCTG GGCAACCGGG
  CCCGTGGGGA CTGCGGGAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38983438	mCV24218150	ABI	CRAMUS_MOUSE	f	SNP		C							A
ss51016667	NES14398525	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A	A	A	A	A		A	A	A		C
ss137860600	ENSMUSSNP2415533	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							A
ss324085695	CHEV_12_70891404	CHEVERUD	SCREENING_POP	f	SNP												A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29176171					SNP	C	C	A	C	A	C	A	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51016667	NES14398525	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69837191 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	55 bp proximal
Rr257091	regulatory region 257091	1410 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	144 bp upstream
Tssr116528	transcription start site region 116528	141 bp upstream
Tssr116529	transcription start site region 116529	119 bp upstream
Tssr116530	transcription start site region 116530	188 bp downstream
Tssr116531	transcription start site region 116531	243 bp downstream
Tssr116532	transcription start site region 116532	812 bp downstream
Tssr116533	transcription start site region 116533	877 bp downstream
Tssr116534	transcription start site region 116534	894 bp downstream
Tssr116535	transcription start site region 116535	908 bp downstream
Tssr116536	transcription start site region 116536	936 bp downstream