rs29176259 SNP Detail

Summary

• ID
  rs29176259
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108145871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACGGGAGCC CTGGCTCCGC CTCCGGGCCG AAGTTCCGTT
  AACAGGTTCG GTTGCTCCCG AACTCCCTTT CGCCAAGGGG GTGGGGCGAT GGGAGGGTGT
  K
  TGCGAGTGTT TCCCCTCCCC CTACGGGCCG CAGTCCACAA GGCCGCAGGG TAGGCGGAGC
  GGCGACTGTT GACTTGTTAC TTTTTTTCTT TTTTTTAGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38981833	mCV24506030	ABI	CRAMUS_MOUSE	f	SNP		G	T
ss138673163	ENSMUSSNP4185971	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29176259					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108145871 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	within coordinates
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	within coordinates
Setd3	SET domain containing 3	298 bp upstream
Tssr114948	transcription start site region 114948	1115 bp downstream
Tssr114949	transcription start site region 114949	752 bp downstream
Tssr114950	transcription start site region 114950	478 bp downstream
Tssr114951	transcription start site region 114951	443 bp downstream
Tssr114952	transcription start site region 114952	30 bp downstream
Tssr114953	transcription start site region 114953	181 bp upstream
Tssr114954	transcription start site region 114954	296 bp upstream
Tssr117676	transcription start site region 117676	387 bp upstream
Tssr117677	transcription start site region 117677	273 bp upstream