rs29176442 SNP Detail

Summary

• ID
  rs29176442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109710820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG GTGGGGGTTG GGAAGTCCAG
  R
  AGGGCATCTT AGAGGAAGAA GCATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss38990416	mCV24948040	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss138683856	ENSMUSSNP4460490	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss324156210	CHEV_12_110982596	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs29176442					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109710820 () rs orientation: forward

Symbol	Name	Function Class
Gm54371	predicted gene, 54371	1149 bp upstream
Mir369	microRNA 369	890 bp downstream
Mir409	microRNA 409	1150 bp downstream
Mir410	microRNA 410	591 bp downstream
Mir412	microRNA 412	1018 bp downstream
Mir541	microRNA 541	1888 bp downstream
Mirc7	microRNA cluster 7, including Mir382 through Mir3072	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc46	microRNA cluster 46, including Mir409 through Mir410	591 bp distal
Mirg	miRNA containing gene	within coordinates
Rr472795	regulatory region 472795	1388 bp proximal
Tssr115184	transcription start site region 115184	597 bp downstream