rs29176658 SNP Detail

Summary

• ID
  rs29176658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110341514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCTCTGAC ACCCACCCCT AGGAGAGGAT GGTCGGGTGA
  AGGAAAGGTA AGGGGTTATT GCTTTTCGTT TGGCCCAAGC TGGGAACCAC TGGAGGTTGA
  R
  CTGTGAACTT GTTCCAGCTT TCCTCTGGAC CTGGATGTCC CACCTTTGCA GTGAGGTGCT
  ACAAGGTACC CCAGTAGGAG TGTGCAGAAG GTGGGGTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38989230	mCV23148375	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss47283048	NES11384374	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	A		G	G	A	G		G	G	A	G		A
ss138689921	ENSMUSSNP4268327	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss324157758	CHEV_12_111613290	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29176658					SNP	A	A	G	G	A	A	A	A	G	G	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47283048	NES11384374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110341514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5113	CpG island 5113	1261 bp distal
Rr472872	regulatory region 472872	1053 bp distal
Rr472873	regulatory region 472873	1480 bp distal
Rr472874	regulatory region 472874	within coordinates
Rr472875	regulatory region 472875	1384 bp proximal
Rr472876	regulatory region 472876	1667 bp proximal
Tssr115196	transcription start site region 115196	433 bp upstream