rs29176782 SNP Detail

Summary

• ID
  rs29176782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109680890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCG AGGCCAGCTT GGTCTACAGA
  R
  TGAGTTCCAG GACAGCCAGG GCTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38986238	mCV24948311	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss138683787	ENSMUSSNP4778009	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29176782					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109680890 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	within coordinates
Gm60279	predicted gene, 60279	1862 bp upstream
Mir323	microRNA 323	1863 bp downstream
Mir329	microRNA 329	879 bp downstream
Mir494	microRNA 494	862 bp upstream
Mir679	microRNA 679	1121 bp upstream
Mir758	microRNA 758	1566 bp downstream
Mir1193	microRNA 1193	1215 bp upstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc44	microRNA cluster 44, including Mir1197 through Mir758	1566 bp distal
Rr262534	regulatory region 262534	1735 bp distal