rs29176805 SNP Detail

Summary

• ID
  rs29176805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52655679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGTAGC TCTAAGTTAA
  CCCATGGATA AACTCATTTC CCCCCTTCTG TCTTGTTTCA AAGGATAGGT GACCCTTGTG
  TATGAAATAT GTGTGGGTGT AAAGCTTCAT TGTCTGGGAT CCAATATCTA AGCCGAGGTC
  TATGGCAGCT GTTTTACAAC TATGTAAGTG TAGGTAAATG ACAGCAGGGC AAAGTAGTCT
  Y
  TGTTACAGAC TACAGGCACT GCCTGGCCTT CAGGGGACCT CTCTGTAAGA AGCCAGTTTT
  GCTTCCTTTT GCACCTTCAT CTCAACATTC CTTTATTCTA CATAATTTTA AAAGTTCTCC
  TTTGAATTGG CTGTAGCATA TGTTTTTATT GTTTTCTACA TTACCTAAAA TCTCTGATAC
  ACGATACACG TTTCTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38985227	mCV22548511	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss137738450	ENSMUSSNP1438859	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss324040185	CHEV_12_53709883	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29176805					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52655679 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Tssr113445	transcription start site region 113445	1253 bp downstream