rs29177101 SNP Detail

Summary

• ID
  rs29177101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11487068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT CCAGGTGGGC CGTACGCACC
  R
  GTCCTTGCAC CACTGAGAGA ATGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38990036	mCV24151122	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss137130104	ENSMUSSNP6579609	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29177101					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11487068 () rs orientation: forward

Symbol	Name	Function Class
4930511A02Rik	RIKEN cDNA 4930511A02 gene	1166 bp upstream
Cpgi4418	CpG island 4418	295 bp distal
Cpgi4419	CpG island 4419	953 bp proximal
Rr462902	regulatory region 462902	1438 bp distal
Rr462903	regulatory region 462903	937 bp distal
Rr462904	regulatory region 462904	within coordinates
Rr462905	regulatory region 462905	646 bp proximal
Rr462906	regulatory region 462906	1147 bp proximal
Rr462907	regulatory region 462907	1675 bp proximal
Tssr3791	transcription start site region 3791	580 bp upstream
Tssr3792	transcription start site region 3792	527 bp upstream
Tssr3793	transcription start site region 3793	347 bp upstream
Tssr112802	transcription start site region 112802	1124 bp upstream
Tssr115745	transcription start site region 115745	1414 bp upstream
Tssr115746	transcription start site region 115746	558 bp upstream
Tssr115747	transcription start site region 115747	464 bp upstream
Tssr115748	transcription start site region 115748	449 bp upstream
Vsnl1	visinin-like 1	489 bp upstream