rs29177189 SNP Detail

Summary

• ID
  rs29177189
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25147414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA GAGTCCGGTG ATGTAGAGGC
  S
  GTAAAATCCG TCCATCTCAG TTTGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38990250	mCV22302934	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	G
ss137401617	ENSMUSSNP6290123	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29177189					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25147414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	654 bp distal
Cpgi4501	CpG island 4501	916 bp proximal
Gm59395	predicted gene, 59395	160 bp downstream
Gm59396	predicted gene, 59396	1802 bp downstream
Id2	inhibitor of DNA binding 2	1323 bp upstream
Rr403250	regulatory region 403250	1052 bp downstream
Rr463954	regulatory region 463954	945 bp distal
Rr463955	regulatory region 463955	286 bp distal
Rr463956	regulatory region 463956	within coordinates
Rr463957	regulatory region 463957	728 bp proximal
Tssr112979	transcription start site region 112979	1676 bp downstream
Tssr112980	transcription start site region 112980	966 bp downstream
Tssr112981	transcription start site region 112981	928 bp downstream
Tssr112982	transcription start site region 112982	13 bp upstream
Tssr112983	transcription start site region 112983	1582 bp upstream
Tssr115884	transcription start site region 115884	1622 bp upstream
Tssr115885	transcription start site region 115885	1319 bp upstream
Tssr115886	transcription start site region 115886	132 bp upstream