rs29177254 SNP Detail

Summary

• ID
  rs29177254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108144738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG GGTGAGGCCC CTCGGCAGCC
  R
  GTGGCGCACG TCACTAATCA GCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38983068	mCV25195846	ABI	CRAMUS_MOUSE	f	SNP	A		G
ss138673154	ENSMUSSNP6629012	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss324152846	CHEV_12_109416689	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29177254					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108144738 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	1100 bp upstream
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	850 bp upstream
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	4 bp upstream
Tssr114949	transcription start site region 114949	372 bp upstream
Tssr114950	transcription start site region 114950	654 bp upstream
Tssr114951	transcription start site region 114951	657 bp upstream
Tssr114952	transcription start site region 114952	1064 bp upstream
Tssr114953	transcription start site region 114953	1314 bp upstream
Tssr114954	transcription start site region 114954	1429 bp upstream
Tssr117676	transcription start site region 117676	731 bp downstream
Tssr117677	transcription start site region 117677	758 bp downstream