rs29177436 SNP Detail

Summary

• ID
  rs29177436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:101845456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTTAAAAGT TGATTTAGCT CCCCAGCCTT GCCCTTTTGG AAAAAAACAA CTTTAGCTTT
  AAAGAATAAT AGATTTTCAA AAAGACATTT TCTTCATTAA ATAATTTTAA AATATAGTTA
  GCAGGAACAA AGGCAACAAA ATCCAAAGAC ACTCTGAAAG ACATTGAAGG GCATGTGACA
  TCTAGATACG GTGTGGTGTC CTACACTACC CAGCACCCTG CAGCAGCGAC GAGTGGTGAG
  TACTGTAGGA CTCCAACAAG CTCGGGCTTC GGATCCTGCT GCAATGCAGC TTCATTTAGC
  Y
  GAAATATGTG ATACTGGGAT AAATGGACCA GGTGGTGGTG GCGCACGCCT TTAATCCCAG
  CACTCGGGAG GCAGAGGCAG GCTCATCTCT GTGTGTTGAA GGTCAGCCTG GACTACAGAA
  CAAGTTCCAG GACAGCCAGG GCTCCTCAGA GAAACCCTGT CTTAAGTAGA TGAAAATTCT
  CTTCACAATC TCTACAACTT GTCTATAAAC CCAAAGCTAT GCTAAAAGAA GTGTTCATTA
  GAAATGTTTT AAAAGGAGCC AGGTGTAAAG GTACATACAT GCCTTTAATC CAGTAGAGGC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38980859	mCV22298704	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29177436					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101845456 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trip11	thyroid hormone receptor interactor 11			Intron
				Noncoding-Transcript-Variant
Tssr117378	transcription start site region 117378			1341 bp downstream